PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00006.1_g00048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 179aa    MW: 19957.6 Da    PI: 9.7298
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00006.1_g00048.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.82.3e-3863121260
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                              ++k+++cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGalrnvPvG+grrk k 
  Rsa1.0_00006.1_g00048.1  63 PDKIIACPRCKSMETKFCYFNNYNVKQPRHFCRGCQRYWTAGGALRNVPVGAGRRKAKP 121
                              68999***************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2862120IPR003851Zinc finger, Dof-type
PfamPF027014.3E-3265120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.71767121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MATQDSQGIK LFGKTITFNA SNITTTTIKK EVQQQQQQQP ELQTTTSFRS SSSSSDLTVE  60
KRPDKIIACP RCKSMETKFC YFNNYNVKQP RHFCRGCQRY WTAGGALRNV PVGAGRRKAK  120
PPGRVGGFAE FLGAATGAVD QVELDALLAE EWRAAASYDG FRHDFPVKRL RCYTDGQSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626298.11e-119PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotP683501e-102DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A078DLL81e-120A0A078DLL8_BRANA; BnaA08g18130D protein
STRINGBra010848.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.14e-95Dof family protein